--- title: "ClawBio - Air Market" description: "ClawBio publishes 72 listings on Air Market." canonical: "https://airmarket.ai/@clawbio" --- [Air Market](/) / [Creators](/creators) / ClawBio Creator # ClawBio **ClawBio on Air Market** | | | | --- | --- | | Listings | 72 | | GitHub | [ClawBio](https://github.com/ClawBio) | **Published listings, with what each one does** | Listing | Kind | What it does | | --- | --- | --- | | [Hla Typing](/app/hla-typing) | Skill | You have sequencing data in VCF form and you need to know which HLA alleles are there. This works out the typing from that data. Reach for… | | [🦖 Ancestry Decomposition PCA](/app/claw-ancestry-pca) | Skill | If you want to understand a genome's ancestry, it helps to place it next to a broad set of human genomes from around the world. This does t… | | [📄 PubMed Summariser](/app/pubmed-summariser) | Skill | You need to get up to speed on a gene or a disease and the literature is too large to read through. Give it the name and it searches PubMed… | | [💊 PharmGx Reporter](/app/pharmgx-reporter) | Skill | You have the raw data file from a home DNA test and want to know what it suggests about how you respond to medicines. This reads that file… | | [Why This Exists](/app/omics-target-evidence-mapper) | Skill | You are deciding which biological target is worth pursuing and the evidence is scattered across many public sources. This collects the targ… | | [🦖 Skill Name](/app/ncbi-datasets) | Skill | You need reference data from NCBI - a genome, some genes, virus sequences, taxonomy - and you would rather just ask for it than work out th… | | [Marker Dominance Mapper](/app/marker-dominance-mapper) | Skill | You have spot counts sitting in CSV files and you want to know which marker dominates in each region. This does that mapping from your loca… | | [🧬 Genome Comparator](/app/genome-compare) | Skill | You have your own genome data and are curious how it compares to someone else's, and where your ancestry sits. This compares your genome to… | | [CRISPR Screen Triage](/app/crispr-screen-triage) | Skill | After a CRISPR screen you are left with a big table of guide counts and no obvious place to start. This ranks the hits for you, reading the… | | [Clinical Trial Finder](/app/clinical-trial-finder) | Skill | When a gene, variant or condition comes up, you may want to know what clinical trials exist around it. This searches trial registries and r… | | [Shotgun Metagenomics Profiler](/app/claw-metagenomics) | Skill | A mixed sample of microbes tells you little until you break it down. This works through shotgun sequencing data to say which organisms are… | | [🎯 Target Validation Scorer](/app/target-validation-scorer) | Skill | Early in drug discovery you have to decide which targets to pursue and which to drop. This scores a target against the evidence behind it a… | | [Struct Predictor](/app/struct-predictor) | Skill | You want to know what shape a protein takes, on its own or bound with other chains, and how much of that answer is reliable. You describe t… | | [🧬 scRNA Embedding](/app/scrna-embedding) | Skill | You have single-cell data, possibly from more than one run, and the runs do not line up with each other. This builds a compact representati… | | [🦖 Repro Enforcer](/app/repro-enforcer) | Skill | Your analysis works on your machine and now somebody else has to run it. This exports it as a bundle carrying the environment it needs, a c… | | [🧪 Recombinator](/app/recombinator) | Skill | You want to see what genomes could come out of a given pair of parents. This produces offspring genomes by simulating how chromosomes recom… | | [Rare High Impact Variants](/app/rare-high-impact-variants) | Skill | You have a VCF and want to know how many rare, likely damaging variants it carries. This counts the loss-of-function variants and tells you… | | [🩸 Rare-Disease Blood RNA-seq Outlier Detection](/app/rare-disease-rnaseq) | Skill | You are trying to reach a diagnosis in a rare disease case and have blood RNA-seq data. This compares the case against a panel of controls,… | | [🥚 Proteomics Differential Expression](/app/proteomics-de) | Skill | You have protein intensity data from a quantitative experiment and need to know which proteins really differ between your groups. This take… | | [NutriGx](/app/nutrigx) | Skill | You have a raw data file from a consumer DNA test and wonder what it says about food and diet. This reads that file, looks at the variants… | | [nf-core Sarek Wrapper](/app/nfcore-sarek-wrapper) | Skill | You have sequencing data and you need variants called and annotated, whether that is a germline sample or a tumor. This runs that whole str… | | [📊 MultiQC](/app/multiqc-reporter) | Skill | A sequencing run leaves QC output from every tool in the chain, and reading them one at a time is tedious. This gathers those outputs into… | | [Methylation Clock](/app/methylation-clock) | Skill | You have DNA methylation array data and you want the epigenetic age that comes out of it. This computes that, taking either a public access… | | [🔬 Labstep](/app/labstep) | Skill | Your lab records live in Labstep and you want to look something up or show it somewhere else. This queries that notebook and displays what… | | [just-prs MCP bridge](/app/just-prs-mcp) | Skill | You have a genome file and you want a polygenic risk score from it. This computes one from that file, running against a scoring engine and… | | [🔍 GWAS Lookup](/app/gwas-lookup) | Skill | You have a variant and the evidence about it is scattered across a lot of separate databases. Checking each one by hand is slow and easy to… | | [🧬 GWAS Catalog Region Fetch](/app/gwas-catalog-region-fetch) | Skill | You need the GWAS numbers for every variant in a stretch of a chromosome, from one particular study. Give it the study accession plus the c… | | [fastreeR](/app/fastreer) | Skill | You have variant or sequence files and want to see how the samples relate to each other. This computes distance matrices and builds phyloge… | | [🦖 Equity Scorer](/app/equity-scorer) | Skill | You want to know how representative the samples in a genomic dataset actually are. This reads VCF or ancestry data and computes diversity a… | | [📸 Drug Photo](/app/drug-photo) | Skill | You are holding a medication and want to know what it means for you specifically, given your genetics. Take a photo of it and this identifi… | | [📈 Differential Visualizer](/app/diff-visualizer) | Skill | The analysis is finished and now you need pictures and a write-up of it. This takes bulk RNA-seq differential expression output, or single-… | | [Differential Expression Summary Reporter](/app/de-summary) | Skill | You have already run the differential expression analysis and now face a long table of genes. This turns it into a summary: which genes ran… | | [📊 Data Extractor](/app/data-extractor) | Skill | Sometimes the only version of a result you can get is a picture of a chart in a paper. This reads the image and gives you the numbers behin… | | [🧬 ClinPGx](/app/clinpgx) | Skill | How a drug works can depend on a person's genes, and the guidance on that is spread across different sources. This queries one API for gene… | | [Clinical Variant Prioritizer](/app/clinical-variant-prioritizer) | Skill | A genotype file holds far more variants than anyone can review. This checks them against established lists of disease-related genes and the… | | [Clawpathy Autoresearch](/app/clawpathy-autoresearch) | Skill | You wrote instructions for an agent, but its results are not good enough and you are not sure which wording is at fault. Give this the task… | | [Methylation Cycle](/app/claw-methylation-cycle) | Skill | Your genotype data holds clues about how one particular chemical pathway in the body is likely to run. This reads SNP genotypes and works o… | | [🔬 Cell Segmentation](/app/cell-detection) | Skill | You have fluorescence microscopy images and need to know where each cell is and how big it is. This finds the cells, measures each one, dra… | | [🧬 BUSCO Assessor](/app/busco-assessor) | Skill | After assembling a genome you need to know whether it is whole or missing pieces. This measures completeness for genomes, transcriptomes an… | | [📊 BioQC (FastQC & MultiQC MCP)](/app/bioqc-mcp) | Skill | Before trusting sequencing data you need to know whether it is any good. This runs the standard quality checks, gathers them together, and… | | [🧬 Bioconductor Bridge](/app/bioconductor-bridge) | Skill | Bioconductor holds a lot of packages, and picking one and getting started with it can take a while. This helps you find a package, suggests… | | [🗃️ BigQuery Public](/app/bigquery-public) | Skill | There are large public datasets you can query with SQL, but it is easy to run something expensive by accident and hard to retrace what you… | | [🧬 Article Data Fetcher](/app/article-data-fetcher) | Skill | A paper mentions data the authors deposited somewhere, but finding and downloading it is its own chore. Hand this a DOI or a PubMed ID and… | | [Archaic Introgression Detector](/app/archaic-introgression) | Skill | Modern human DNA carries pieces inherited from Neanderthals and Denisovans. If you have modern human genome data and want to know which par… | | [🧬 Ancestry-Aware Disease Risk Profiler](/app/ancestry-risk-profiler) | Skill | You have a consumer DNA file and you know most published risk numbers were worked out on European samples. This works out the broad ancestr… | | [🦀 xena-tcga-gene-query](/app/xena-tcga-gene-query) | Skill | You have a gene in mind and want to know how it behaves in real tumours. This queries TCGA data to compare tumour against normal tissue, re… | | [Informe Clinico WES en Espanol](/app/wes-clinical-report-es) | Skill | Exome sequencing results need to reach a clinician or patient who reads Spanish. This assembles them into a finished PDF report in Spanish,… | | [WES Clinical Report (English)](/app/wes-clinical-report-en) | Skill | Exome sequencing produces findings that a clinician still has to explain to somebody. This assembles those results into a finished PDF repo… | | [🧬 Variant Annotation](/app/variant-annotation) | Skill | A VCF file is a long list of variants with no indication which ones matter. This adds what is known about each one, including clinical sign… | | [🕸 TuringDB Graph](/app/turingdb-graph) | Skill | Biomedical knowledge is full of connections between things, and holding it as a graph makes those connections askable. This lets you build… | | [🦖 Seq Wrangler](/app/seq-wrangler) | Skill | Raw sequencing reads need checking, aligning, and cleaning up before anything else, and that means running several separate programs in the… | | [Sample QC Triage](/app/sample-qc-triage) | Skill | Before you analyse a batch of samples, some of them are quietly wrong: mixed up, contaminated, or run on a day that behaved differently. Th… | | [🧬 RNA-seq Differential Expression](/app/rnaseq-de) | Skill | You have a count matrix from bulk RNA-seq and need to know which genes differ between your conditions. This runs the quality checks, shows… | | [🧪 Protocols.io Bridge](/app/protocols-io) | Skill | You need the actual steps of a lab method and it lives on protocols.io. This searches, browses and pulls protocols back for you, including… | | [🐻 polars-bio](/app/polars-bio) | Skill | You are comparing sets of genomic regions - what overlaps what, what is nearest, what to merge or subtract. This does those operations on P… | | [Organ Aging Studio](/app/organ-aging-studio) | Skill | You have proteomic measurements and want to see what an aging clock says about them, not just the final number. This lets you filter by org… | | [nf-core scRNA-seq Wrapper](/app/nfcore-scrnaseq-wrapper) | Skill | You have raw single-cell sequencing files and need them turned into something you can analyse. This runs the preprocessing for you, checks… | | [🧬 Mendelian Randomisation](/app/mendelian-randomisation) | Skill | You want to know whether one trait plausibly causes another, and you have summary statistics from two studies rather than individual data.… | | [🦖 Lit Synthesizer](/app/lit-synthesizer) | Skill | You need to know what has already been published on a bioinformatics question, and reading through search results one by one takes a long t… | | [📊 GWAS Pipeline](/app/gwas-pipeline) | Skill | Running a genome-wide association study means chaining several tools together and keeping the outputs straight. This runs the whole path fo… | | [Galaxy Bridge](/app/galaxy-bridge) | Skill | Galaxy has an enormous number of tools and finding the right one is its own task. This searches them, recommends candidates using several s… | | [Flow Bio Bridge](/app/flow-bio) | Skill | Your data and pipelines live in Flow and you would rather not switch to its interface for every small thing. This connects to the Flow API… | | [🧬 eQTL Catalogue Region Fetch](/app/eqtl-catalogue-region-fetch) | Skill | You need the eQTL numbers for every variant in a window around a gene, from one particular dataset. Give it the dataset, chromosome, start… | | [💊 Drug Repurposing Screen](/app/drug-repurposing-screen) | Skill | You ran a pooled viability screen and want to know which existing drugs deserve follow-up. This takes the screen through quality checks, hi… | | [🦖 CNV ACMG Classifier](/app/cnv-acmg-classifier) | Skill | You have a copy-number change - a stretch of DNA deleted or duplicated - and you need to say how likely it is to matter. This applies the C… | | [🧬 analyze-fasta](/app/analyze-fasta) | Skill | You have a single FASTA file, nucleotide or protein, and you want the standard numbers off it without writing the script yourself. This com… | | [🧪 Affinity Proteomics Pipeline](/app/affinity-proteomics) | Skill | You have protein measurements back from Olink or SomaLogic and the two platforms want handling differently. This runs one pipeline that kno… | | [🧪 UKB-PPP Region Fetch](/app/ukb-ppp-region-fetch) | Skill | You are looking at one region of the genome and one blood protein, and you need the per-variant numbers there rather than a whole-genome fi… | | [🦖 scRNA Orchestrator](/app/scrna-orchestrator) | Skill | You have single-cell RNA data as raw counts and want the usual journey: clean it, group the cells, and see what distinguishes each group. T… | | [🎯 LocusCompare Regional Diagnostic](/app/locuscompare-region-render) | Skill | Two studies both show a signal in the same region and you want to know whether they are really pointing at the same variant. This draws a s… | | [🧬 LD 1000G Region Compute](/app/ld-1000g-region-compute) | Skill | You are looking at one region around a variant and you need to know how strongly nearby variants travel with it. This works out those pairw… | | [DnaSP](/app/dnasp) | Skill | You have aligned DNA sequences and need the standard population genetics numbers from them. This is a full reimplementation of DnaSP 6, cov… | ## Links - [clawbio.github.io](https://clawbio.github.io/) - [GitHub](https://github.com/ClawBio) --- Canonical URL: