---
title: "🦖 Seq Wrangler - Air Market"
description: "Raw sequencing reads need checking, aligning, and cleaning up before anything else, and that means running several separate programs in the right order. This drives them for you, from reads through t…"
canonical: "https://airmarket.ai/app/seq-wrangler"
---

[Air Market](/) / [Data & Analytics](/category/data) / 🦖 Seq Wrangler

Skill by [ClawBio](/@clawbio)

# 🦖 Seq Wrangler

Get from raw sequencing reads to aligned BAMs without hand-driving each tool

## What this does

Raw sequencing reads need checking, aligning, and cleaning up before anything else, and that means running several separate programs in the right order. This drives them for you, from reads through to finished BAM files, and gathers the quality reports together. Reach for it whenever new sequencing data lands and you need it ready for analysis.

### Top 3 things it does for you

- Check the quality of sequencing reads
- Align reads to a reference
- Process and tidy up BAM files

## Information

**🦖 Seq Wrangler at a glance**

|  |  |
| --- | --- |
| Kind | Skill |
| Publisher | [ClawBio](/@clawbio) |
| Category | [Data & Analytics](/category/data) |
| Works with | Agent Skills - an open standard supported by 40+ agents |
| Size | 48 KB |
| Licence | MIT |
| Repository | [ClawBio/ClawBio](https://github.com/ClawBio/ClawBio/tree/bc320c443e44f6b260fe1467c548c040d8cbd0d0/skills/seq-wrangler) |
| GitHub stars | 1,114 (as of Nov 2026) |

## Security report

**Verified.** AIR scanned this exact version of 🦖 Seq Wrangler and flagged nothing. AIR's verdict: **safe**.

**What 🦖 Seq Wrangler's check was run against**

|  |  |
| --- | --- |
| Commit | bc320c443e44f6b260fe1467c548c040d8cbd0d0 |
| Content hash | b8de2344232e63b1a1c7facb91f642c6914b3851a3827da88e4bf078eb21f38c |
| Files read | [Browse the files at this exact commit](https://github.com/ClawBio/ClawBio/blob/bc320c443e44f6b260fe1467c548c040d8cbd0d0/skills/seq-wrangler/SKILL.md) |

A scan is named by the exact content it read, not by a version number. A different version is a different artifact, and nothing here applies to a version AIR has not scanned.

[Read the full security report for 🦖 Seq Wrangler](/security/seq-wrangler)

## About 🦖 Seq Wrangler

An NGS pipeline covering read quality control, alignment, and BAM processing. It wraps FastQC, BWA, Bowtie2, Minimap2, SAMtools, and MultiQC.

The work runs as an automated read-to-BAM workflow, so the individual tools are invoked as part of one pass.

## What's inside

- SKILL.md - instructions
- examples/demo-results/report.md - reference
- README.md - reference
- seq_wrangler.py - script
- tests/test_seq_wrangler.py - script

## Questions

### Is 🦖 Seq Wrangler safe to install?

AIR scanned this exact version of 🦖 Seq Wrangler and flagged nothing. AIR's verdict: safe. The verdict is named by the content that was read, at commit bc320c443e44, so it cannot drift onto a version nobody scanned. The full report is at https://airmarket.ai/security/seq-wrangler.

### How do I install 🦖 Seq Wrangler?

Open https://airmarket.ai/app/seq-wrangler on Air Market and use the install action: Air Market hands Claude a prompt naming this exact skill, and Claude sets it up. Source, pinned to the exact commit this listing describes: https://github.com/ClawBio/ClawBio/tree/bc320c443e44f6b260fe1467c548c040d8cbd0d0/skills/seq-wrangler. Install from that link, not the branch.

## Related on Air Market

- [More Data & Analytics listings](/category/data)
- [Everything by ClawBio](/@clawbio)

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Canonical URL: <https://airmarket.ai/app/seq-wrangler>